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moontreegy / scseq_data_formatting

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31746739_Drosophila_Brain #14

Open moontreegy opened 4 years ago

moontreegy commented 4 years ago

PMID: 31746739 Species: Drosophila Tissue: Brain Paper title: Single-cell transcriptome atlas of the Drosophila larval brain Paper link: https://pubmed.ncbi.nlm.nih.gov/31746739/ GEO link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134722

Note: Two conditions, starved and normal, also generating a merged version.

Result location: /n/groups/flyrnai/Yue/scseq_data_formatting/processing_data/31746739_Drosophila_Brain/results/

moontreegy commented 4 years ago

@drsc-user Hi Aram, this dataset is done. It has two conditions, normal and starved, and I also generate a merged one.

moontreegy commented 4 years ago

@drsc-user Hi Aram, I reprocessed the normal-condition using the same barcode2cluster metadata with the starving and merged condition. They all have 17 clusters now.

data is stored at: /n/groups/flyrnai/Yue/scseq_data_formatting/processing_data/31746739_Drosophila_Brain/results with the prefix "Normal-reprocess-using17-clusters".

moontreegy commented 4 years ago

@drsc-user Hi Aram, The final decision for this dataset is to use the low resolution, so I merged the subclusters in the metadata (combine the 2 Undifferentiated neurons, 16 clusters in total). In this updated version, all three conditions are reprocessed, the files with prefix “Combine2UNcells-using16Clusters-” for 3 conditions (normal, starve and merged) are generated.

data stored at: /n/groups/flyrnai/Yue/scseq_data_formatting/processing_data/31746739_Drosophila_Brain/results results with the prefix "Combine2UNcells-using16Clusters-"