5 patient datasets with a combined one, select up to top 100 markers for each cluster (order by avg_logFC, p_val < 0.05), only calculate markers for cluster contains not less than 3 cells.
Below is the data for 31413257_Human_Blood:
/n/groups/flyrnai/yifang/Projects/With/Yue_Aram/scseq_data_formatting/processing_data/31413257_Human_Blood/results/
PMID: 31413257
Species: Human
Tissue: Blood
Paper title: A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing
Paper link: https://www-nature-com.ezp-prod1.hul.harvard.edu/articles/s41467-019-11591-1
dbGaP link: https://www-ncbi-nlm-nih-gov.ezp-prod1.hul.harvard.edu/projects/gap/cgi-bin/study.cgi?study_id=phs000159.v8.p4
Note:
Get Seurat object from https://zenodo.org/record/3345981#.X3soxJNKhtY
5 patient datasets with a combined one, select up to top 100 markers for each cluster (order by avg_logFC, p_val < 0.05), only calculate markers for cluster contains not less than 3 cells.