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moosa-r / rbioapi

rbioapi: User-Friendly R Interface to Biologic Web Services' API
https://rbioapi.moosa-r.com/
GNU General Public License v3.0
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Panther API update #2

Closed alexankc closed 2 years ago

alexankc commented 2 years ago

Hi,

I have started using your tool and realized there are some differences between the results from the _rba_pantherenrich function and the Panther website (including their version of the Panther API).

It would be great if you could incorporate these updates in rbioapi.

Cheers, Alex

moosa-r commented 2 years ago

Dear Alex

Thank you for creating this issue. I have checked and it seems that rbioapi is up to date with PANTHER's API services.

I've also run the example in rba_panther_enrich function and the results are identical when the same parameters are used in the PANTHER website:

rba_panther_enrich(
genes = c("p53", "BRCA1", "cdk2", "Q99835", "CDC42",  "CDK1", "KIF23", "PLK1", "RAC2", "RACGAP1"),
organism = 9606,
annot_dataset = "GO:0008150",
cutoff = 0.01
)

image

Could you please provide me the code snippet that produced inconsistent results so I could be of more help?

Best, Moosa

alexankc commented 2 years ago

Thank you for your reply Moosa!

I just realized there was something wrong with my input in my script, so that's why there was some difference. There is no issue with PANTHER.

Thank you for taking the time to consider this.

Best, Alexandros