search

moqri / PRC2-AgeIndex

Other
2 stars 1 forks source link

A list of PCR2-ageindex CpGs for Illumina 450k and EPIC arrays #1

Open karoliskoncevicius opened 1 month ago

karoliskoncevicius commented 1 month ago

Hello and congratulations with the publication.

Not sure if this is a place to ask - but I was wondering, is there a list of Illumina methylation microarray CpGs used by your PCR2 aging index? I went through the paper and supplements, but didn't find it.

AaronBlare commented 2 weeks ago

I faced the same problem. The PRC2-AgeIndex in the paper is calculated for 450k methylation (among others), but there is no list of CpG sites in the text, in the supplementary, or in this repository. Files with the code that should build Figures 3 and 4 refer to files with methylation data of different GSEs (from which a list of CpGs could be extracted), but they are missing in the repository.

moqri commented 2 weeks ago

@dsimps1993 , can you please add the lists to the repository? (we are all good with the IP now)