morinlab / GAMBLR.data

Collection of Curated Data for Genomic Analysis of Mature B-cell Lymphomas in R
https://morinlab.github.io/GAMBLR.data/
MIT License
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Add `get_cnv_and_ssm_status` .data version #84

Open vladimirsouza opened 6 months ago

vladimirsouza commented 6 months ago

To address this issue, this PR adds the GAMBLR.data version of get_cnv_and_ssm_status.

For consistency, all changes in the GAMBLR.data version will be also applied to the GAMBLR.results version.

vladimirsouza commented 6 months ago

I don't understand why this error in GitHub checks. Could someone help me, please?

Warning messages:
1: packages ‘Matrix’, ‘MASS’ are not available for this version of R
‘MASS’ version 7.3-60.2 is in the repositories but depends on R (>= 4.4.0)
‘Matrix’ version 1.7-0 is in the repositories but depends on R (>= 4.4.0)
‘MASS’ version 7.3-60.2 is in the repositories but depends on R (>= 4.5)
‘Matrix’ version 1.7-0 is in the repositories but depends on R (>= 4.5)

Versions of these packages for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 
2: In i.p(...) :
  installation of package ‘stringi’ had non-zero exit status
3: In i.p(...) : installation of package ‘mgcv’ had non-zero exit status
4: In i.p(...) :
  installation of package ‘ggplot2’ had non-zero exit status
Execution halted
Error: Process completed with exit code 1.