Error in `get_gene_cn_and_expression`

morinlab / GAMBLR.results

A collection of functions to access results of the Genomic Analysis of Mature B-cell Lymphomas

MIT License

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Error in `get_gene_cn_and_expression` #23

Open vladimirsouza opened 9 months ago

vladimirsouza commented 9 months ago

> MYC_cn_expression <- get_gene_cn_and_expression("MYC")
[1] "grep -w -F -e Hugo_Symbol -e MYC /projects/nhl_meta_analysis_scratch/gambl/results_local/icgc_dart/DESeq2-0.0_salmon-1.0/mrna--gambl-icgc-all/vst-matrix-Hugo_Symbol_tidy.tsv"
Error in `left_join()`:
! Can't join `x$sample_id` with `y$genome_sample_id` due to incompatible types.
ℹ `x$sample_id` is a <character>.
ℹ `y$genome_sample_id` is a <logical>.
Run `rlang::last_trace()` to see where the error occurred.

Kdreval commented 9 months ago

Thanks for posting this as issue! It was reported several months ago but since we are still not complete with the migration to thematic packages, I did not tackle this specific bug.