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morinlab / GAMBLR.results

A collection of functions to access results of the Genomic Analysis of Mature B-cell Lymphomas
MIT License
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`cbio_create()` does not support a mix of seq types #38

Closed Kdreval closed 8 months ago

Kdreval commented 8 months ago

The culprit is to be identified, but the current set up generates either genome- or capture-only instance when both seq types are requested to be present

Kdreval commented 8 months ago

The issue was that there was an internal call to the collate_metadata(), which only works for one of the seq types but not for the mix of the seq types since it is reading from a seq_type-centric flatfile. That call has been replaced with get_gambl_metadata(), and any additional metadata not available through this call can always be passed with the metacol argument. This is now fixed in #39 Closing this issue as resolved.