update to `get_coding_ssm_status` to support gene-specific handling of silent variants

morinlab / GAMBLR.results

A collection of functions to access results of the Genomic Analysis of Mature B-cell Lymphomas

MIT License

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update to `get_coding_ssm_status` to support gene-specific handling of silent variants #42

Closed Kdreval closed 7 months ago

Kdreval commented 7 months ago

This harmonizes the behaviour of this function with the update implemented in GAMBLR.data. More details and examples from test runs in this Slack thread. Additional update includes formatting the description and documentation to not exceed 80 char, and proper indent of the function definition