The annotation shows values not present in the data

[Kdreval]

I wonder if someone can reproduce/check if this is a bug.

genome_ssm_data = get_coding_ssm()
ssm_data_capture = get_coding_ssm(this_seq_type = "capture")
all_ssm = bind_rows(ssm_data_capture,genome_ssm_data) #combine all ssm into one large data frame

#Problem:
#this makes a plot with every cohort in the legend even if no samples from the cohort exist in the MAF
prettyOncoplot(maf_df = all_ssm,these_samples_metadata = 
                 all_sample_meta,
               minMutationPercent = 5,metadataColumns = c("pathology","cohort"),
               sortByColumns = c("pathology","cohort"))

# Expected functionality (requires an explicit filter)
# this only shows the relevant cohorts in the legend (i.e. those in the oncoplot)
prettyOncoplot(maf_df = all_ssm,these_samples_metadata = 
                 filter(all_sample_meta,sample_id %in% all_ssm$Tumor_Sample_Barcode),
               minMutationPercent = 5,metadataColumns = c("pathology","cohort"),
               sortByColumns = c("pathology","cohort"))```

[Slack Message](https://morinlabsfu.slack.com/archives/C0224H120CU/p1706573886956999?thread_ts=1706573886.956999&cid=C0224H120CU)

[Kdreval]

Closing as completed