morinlab / GAMBLR.viz

Collection of functions to make plots for Genomic Analysis of Mature B-cell Lymphomas in R

https://morinlab.github.io/GAMBLR.viz/

MIT License

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Closed Kdreval closed 3 months ago

Kdreval commented 3 months ago

This PR is to address the following issues:

Pull Request Checklists

Important: When opening a pull request, keep only the applicable checklist and delete all other sections.

[X] I ensured not to prepend the functions existing in both GAMBLR.data and GAMBLR.results with <package>::function() syntax.
[X] I ensured not to add GAMBLR.data or GAMBLR.results to the @import section of the documentation

Kdreval commented 3 months ago

This page of the website is already generated with this branch and shows that both issues in the prettyOncoplot are properly addressed: https://morinlab.github.io/GAMBLR.viz/tutorials/oncoplot.html#annotating-significance-of-mutation-frequencies-in-sample-groups