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morinlab / GAMBLR

Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
3 stars 2 forks source link

SRAdb dependency error #1

Closed lkhilton closed 3 years ago

lkhilton commented 3 years ago

While running devtools::install() from within my RStudio on gphost10 I ran into this error: 

* installing to library ‘/home/lhilton/R/x86_64-centos7-linux-gnu-library/3.6’
ERROR: dependency ‘SRAdb’ is not available for package ‘GAMBLR’
* removing ‘/home/lhilton/R/x86_64-centos7-linux-gnu-library/3.6/GAMBLR’

I was able to manually install SRAdb with BiocManager::install("SRAdb"). After that GAMBLR installed without error.

rdmorin commented 3 years ago

This is theoretically now fixed.

rdmorin commented 3 years ago

Confirmed fixed. SRAdb auto-installs in a fresh R.