Removed allow_clusted flag, which is not supported by downstream functions

[ckrushton]

Pull Request Checklists

Important: When opening a pull request, keep only the applicable checklist and delete all other sections.

Checklist for all PRs

Required

• [x] I tested the new code for my use case (please provide a reproducible example of how you tested the new functionality)

get_ssm_by_regions(regions_bed = grch37_ashm_regions)

• [x] I ensured all dplyr functions that commonly conflict with other packages are fully qualified.

This can be checked and addressed by running check_functions.pl and responding to the prompts. Test your code after you do this.

Checklist for changes to existing code

• [x] I added/removed arguments to a function and updated documentation for all changed/new arguments

• [ ] I tested the new code for compatability with existing functionality in the Master branch (please provide a reprex of how you tested the original functionality)

Not done, as this change should not affect existing functionality

[mattssca]

This issue was addressed in another PR that was active at the same time as this was created and has been resolved, can you confirm @ckrushton

Thanks,

[ckrushton]

I can confirm this has been fixed. Thanks!

---

From: Carl-Adam Mattsson @.***> Sent: August 4, 2022 2:49:09 PM To: morinlab/GAMBLR Cc: Christopher Rushton; Mention Subject: Re: [morinlab/GAMBLR] Removed allow_clusted flag, which is not supported by downstream functions (PR #105)

This issue was addressed in another PR that was active at the same time as this was created and has been resolved, can you confirm @ckrushtonhttps://github.com/ckrushton

Thanks,

— Reply to this email directly, view it on GitHubhttps://github.com/morinlab/GAMBLR/pull/105#issuecomment-1205787649, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AFKSNJATMECDAJYI5KJXKATVXQY2HANCNFSM5ZYU6BFQ. You are receiving this because you were mentioned.Message ID: @.***>

[mattssca]

This has been resolved in another PR