The BL RF is updated to use the one developed for the paper revision
The new case set is added to the get_gambl_metadata() that represents BL manuscript cases + HTMCP
BL subgroup renaming M53-BL -> Q53-BL
Added a new function supplement_maf to complete the maf file if some samples are missing (used in the MIRAGE paper)
Updated the splendidHeatmap to allow optional ordering on numeric metadata column if it is proveded, and with some modifications related to showing the total N of features/sample in the top barplot
Some bug fixes to get_coding_ssm_status and puresteenah functions
Here:
get_gambl_metadata()that represents BL manuscript cases + HTMCPsupplement_mafto complete the maf file if some samples are missing (used in the MIRAGE paper)splendidHeatmapto allow optional ordering on numeric metadata column if it is proveded, and with some modifications related to showing the total N of features/sample in the top barplot