`annotate_driver_ssm` has the wrong argument name

morinlab / GAMBLR

Set of standardized functions to operate with genomic data

https://morinlab.github.io/GAMBLR/

MIT License

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`annotate_driver_ssm` has the wrong argument name #126

Closed lkhilton closed 1 year ago

lkhilton commented 1 year ago

The function annotate_driver_ssm calls for the following arguments:

function (maf_df, lymphoma_type, driver_genes, noncoding_regions = c(NFKBIZ = "chr3:101578206-101578365", 
    HNRNPH1 = "chr5:179,045,946-179,046,683"))

Within the function body, the non-coding argument is referenced as include_noncoding.

This should be updated so the function can read from its arguments.

mattssca commented 1 year ago

Thanks for reporting this bug @lkhilton this has been addressed in this commit.