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morinlab / GAMBLR

Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
3 stars 2 forks source link

classify FLs functionality + bug fix #141

Closed Kdreval closed 1 year ago

Kdreval commented 1 year ago

Here the new function classify_fl is introduced to facilitate reproducible and scalable classification of FL tumors into subgroups. It only needs metadata or maf data frame (or both) and will assemble matrix, classify samples, and return either predictions, matrix, or both.

Also the bug fix for the issue #127

Kdreval commented 1 year ago

I am working on an update for this PR to introduce additional functionality to classify DLBCLs

Kdreval commented 1 year ago

This PR is now ready for review!

Kdreval commented 1 year ago

I have made the updates and this is ready for re-review and testing!

mattssca commented 1 year ago

Thanks for the updates @Kdreval. Looks good to me. I have tested the newly added functions, as well as all examples in the test_functions.R script.

Kdreval commented 1 year ago

Thanks Adam!