Can someone please determine if these warnings can be safely suppressed or find a way to avoid them happening?
this_sample = "00-15201_tumorA"
this_sample_ssm = get_ssm_by_sample(this_sample_id = this_sample,
+ this_seq_type = "genome",
+ projection = "grch37")
you should also run this command to ensure the ssh library is loaded:
library(ssh)
Warning messages:
1: In data.table::fread(file = maf_file_path, sep = "\t", stringsAsFactors = FALSE, :
Attempt to override column 59 <<DISTANCE>> of inherent type 'float64' down to 'bool8' ignored. Only overrides to a higher type are currently supported. If this was intended, please coerce to the lower type afterwards.
2: In data.table::fread(file = maf_file_path, sep = "\t", stringsAsFactors = FALSE, :
Attempt to override column 89 <<MOTIF_NAME>> of inherent type 'string' down to 'bool8' ignored. Only overrides to a higher type are currently supported. If this was intended, please coerce to the lower type afterwards.
3: In data.table::fread(file = maf_file_path, sep = "\t", stringsAsFactors = FALSE, :
Attempt to override column 90 <<MOTIF_POS>> of inherent type 'float64' down to 'bool8' ignored. Only overrides to a higher type are currently supported. If this was intended, please coerce to the lower type afterwards.
4: In data.table::fread(file = maf_file_path, sep = "\t", stringsAsFactors = FALSE, :
Attempt to override column 91 <<HIGH_INF_POS>> of inherent type 'string' down to 'bool8' ignored. Only overrides to a higher type are currently supported. If this was intended, please coerce to the lower type afterwards.
Can someone please determine if these warnings can be safely suppressed or find a way to avoid them happening?