Functions that are still calling sample_id parameter, should receive an update to rename this parameter to either this_sample_id or these_sample_ids so that this parameter name is consistent throughout all functions in GAMBLR.
These are the functions that are currently using sample_id:
get_combined_sv
plot_multi_timepoint
finalize_stud (in portal.R)
assemble_file_details
estimate_purity
make_igv_snapshot
cnvKompare
Functions that are still calling
sample_idparameter, should receive an update to rename this parameter to eitherthis_sample_idorthese_sample_idsso that this parameter name is consistent throughout all functions in GAMBLR.These are the functions that are currently using
sample_id: