Closed rdmorin closed 1 year ago
Running devtools::install() with the Master branch gives this output. Can this be addressed?
Enter one or more numbers, or an empty line to skip updates: ✔ checking for file ‘/Users/rmorin/git/GAMBLR/DESCRIPTION’ ... ─ preparing ‘GAMBLR’: (470ms) ✔ checking DESCRIPTION meta-information ... Warning: bad markup (extra space?) at chromosome_arms_grch37.Rd:16:2 Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:19: unexpected section header '\usage' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:22: unexpected section header '\description' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:25: unexpected section header '\keyword' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:26: unexpected END_OF_INPUT ' ' Warning: bad markup (extra space?) at chromosome_arms_hg38.Rd:16:2 Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:19: unexpected section header '\usage' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:22: unexpected section header '\description' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:25: unexpected section header '\keyword' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:26: unexpected END_OF_INPUT '
I picked up this issue too. This is already fixed in PR #177 That PR is ready for review
The fix is now merged to master
Running devtools::install() with the Master branch gives this output. Can this be addressed?
Enter one or more numbers, or an empty line to skip updates: ✔ checking for file ‘/Users/rmorin/git/GAMBLR/DESCRIPTION’ ... ─ preparing ‘GAMBLR’: (470ms) ✔ checking DESCRIPTION meta-information ... Warning: bad markup (extra space?) at chromosome_arms_grch37.Rd:16:2 Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:19: unexpected section header '\usage' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:22: unexpected section header '\description' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:25: unexpected section header '\keyword' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_grch37.Rd:26: unexpected END_OF_INPUT ' ' Warning: bad markup (extra space?) at chromosome_arms_hg38.Rd:16:2 Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:19: unexpected section header '\usage' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:22: unexpected section header '\description' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:25: unexpected section header '\keyword' Warning: /private/var/folders/kk/mjt9hn3n7nn25nfvhv6mkjm40000gn/T/Rtmpk0nEGf/Rbuildab634845df0c/GAMBLR/man/chromosome_arms_hg38.Rd:26: unexpected END_OF_INPUT '