search

morinlab / GAMBLR

Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
3 stars 2 forks source link

Using GAMBLR with no remote/GAMBL access requires set up #183

Closed ninaliuta closed 9 months ago

ninaliuta commented 1 year ago

I’m currently using GAMBLR locally on my computer and I don’t have GAMBL/remote access. I’m getting this error when I run get_gambl_metadata because it’s not currently set up to access metadata locally. Any suggestions to make GAMBLR local-user friendly? Thank you!

> this_metadata = get_gambl_metadata(seq_type_filter = "genome")
[1] "missing:  /Users/rmorin/git/gambl/data/metadata/gambl_all_outcomes.tsv"
Have you cloned the GAMBL repo and added the path to this directory under the local section of your config?
Error: '/Users/rmorin/git/gambl/data/metadata/gambl_all_outcomes.tsv' does not exist.
Kdreval commented 9 months ago

This is now solved with a paired object GAMBLR.data::gambl_metadata and can be retrieved with GAMLR.data::get_gambl_metadata(). Closing the issue as completed.