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morinlab / GAMBLR

Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
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collate_results fails for capture when join_with_full_metadata = TRUE #185

Closed rdmorin closed 1 year ago

rdmorin commented 1 year ago 
exome_collated = collate_results(seq_type_filter="capture",join_with_full_metadata = T)
/projects/nhl_meta_analysis_scratch/gambl/results_local/shared/gambl_capture_results.tsv                                                                               
Joining, by = c("patient_id", "sample_id", "biopsy_id")                                                                                                                
Error in `mutate_cols()`:
! Problem with `mutate()` column `MYC_SV_any`.
ℹ `MYC_SV_any = case_when(...)`.
x object 'manta_MYC_sv' not found
Caused by error:
! object 'manta_MYC_sv' not found
Run `rlang::last_error()` to see where the error occurred.