`grch37_lymphoma_genes_bed` is corrupted

morinlab / GAMBLR

Set of standardized functions to operate with genomic data

https://morinlab.github.io/GAMBLR/

MIT License

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`grch37_lymphoma_genes_bed` is corrupted #193

Closed Kdreval closed 1 year ago

Kdreval commented 1 year ago

The bundled object grch37_lymphoma_genes_bed is corrupted in the entry 173:

171 7                               151832010    152133090 KMT2C      
172 8                                 1993155      2113475 MYOM2      
173 8   8640864 8751155 MFHAS1             NA           NA NA         
174 8                                20054878     20084330 ATP6V1B2   
175 8                                35092975     35654068 UNC5D

This causes some functions to fail, for example running get_cn_states(regions_bed=grch37_lymphoma_genes_bed) will result in an error. Looks like this can be tracked to this commit.

Kdreval commented 1 year ago

Can confirm this is resolved now in this commit