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morinlab / GAMBLR

Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
3 stars 2 forks source link

ensure Morinlab fork of g3viz is installed as a dependency #62

Closed rdmorin closed 2 years ago

rdmorin commented 2 years ago

It seems that the auto-installation of dependencies is relying on the main g3viz version, which doesn't handle MAFs the way we need for certain functions. For some GAMBLR functions to work we need users to have the version here:

https://github.com/morinlab/g3viz

Can GAMBLR be set up to automatically install from this fork?

mattssca commented 2 years ago

I believe this can be done by adding the following lines to GAMBLR DESCRIPTION:

Remotes: github::morinlab/g3viz

And then just add g3viz under Imports: section.

I am doing some testing...

mattssca commented 2 years ago

I can confirm that this indeed works. I have updated the associated files and will push them to my branch shortly.