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morinlab / GAMBLR

Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
3 stars 2 forks source link

Functions for QC data #94

Closed rdmorin closed 1 year ago

rdmorin commented 2 years ago

We should set up some functions (and update the config) to leverage the outputs of the new QC pipeline Kostia implemented. The main output is a single tabular file that could even be stitched on with the other data brought in by the collate* functions. Perhaps adding a new collate function for this and the paths in the config are a first step then we can figure out some functions to summarize the QC metrics and report a sample-level set of QC details in the context of all other samples.

mattssca commented 2 years ago

I like the sound of this, I'd be happy to self-assign this task if no objections.