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morinlab
/
GAMBLR
Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
3
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2
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Identify helper/internal and obsolete functions.
#56
mattssca
closed
2 years ago
4
The vignette for new users implemented as update to README.md dispalyed on package home
#55
Kdreval
closed
1 year ago
1
COMPOSITE class as default is a bug
#54
rdmorin
closed
2 years ago
3
GAMBLR Code Review
#53
mattssca
closed
2 years ago
13
Add license
#52
rdmorin
closed
2 years ago
2
Update/complete/fix missing/old documentation
#51
rdmorin
closed
2 years ago
1
Add option for user to provide/obtain full gene expression data frame
#50
rdmorin
closed
2 years ago
2
Lhilton tidy inputs
#49
lkhilton
closed
2 years ago
2
color not properly matching to MZL
#48
princeklat03
closed
2 years ago
1
add function for gridss svs
#47
rdmorin
closed
2 years ago
0
switch ssm results from current to versioned results
#46
Kdreval
closed
2 years ago
0
Rmorin dev
#45
rdmorin
closed
2 years ago
1
modified how plots and tables are output from the estimate_purity fun…
#44
kristenadaley
closed
2 years ago
0
estimate_purity function modifications
#43
kristenadaley
closed
2 years ago
0
improved and possibly broke prettyForestPlot
#42
rdmorin
closed
2 years ago
1
do you like Heatmap function name?
#41
Kdreval
closed
2 years ago
1
added packages in the @input section for purity estimation function
#40
kristenadaley
closed
2 years ago
0
add purity estimate function and adjust assign_cn_to_ssm function to …
#39
kristenadaley
closed
2 years ago
0
Rmorin dev
#38
rdmorin
closed
2 years ago
1
prettyForestPlot
#37
lkhilton
closed
2 years ago
0
fix FL cohort and use transformation status for tFL-study case set
#36
rdmorin
closed
2 years ago
0
update to case sets
#35
rdmorin
closed
2 years ago
0
update function to accept maf and seg file paths
#34
kristenadaley
closed
2 years ago
0
Fixed bug enabling top barplot
#33
kristenadaley
closed
2 years ago
1
some updates
#32
rdmorin
closed
2 years ago
2
new functions and some bug fixes
#31
Kdreval
closed
2 years ago
1
More from-flatfile functionality to reduce reliance on the database
#30
rdmorin
closed
2 years ago
0
Customize get_mutation_frequency_bin_matrix
#29
Kdreval
closed
3 years ago
0
add missing data and some bug fix
#28
rdmorin
closed
3 years ago
3
bug fixes
#27
rdmorin
closed
3 years ago
0
some minor updates to aSHM code
#26
rdmorin
closed
3 years ago
0
adult BL paper and FL+all DLBCL case sets
#25
Kdreval
closed
3 years ago
3
updates to shm analyses
#24
rdmorin
closed
3 years ago
1
support custom colors in prettyOncoplot annotations
#23
Kdreval
closed
3 years ago
0
new functionality for working with merged flatfiles and non-ICGC data
#22
rdmorin
closed
3 years ago
0
Rmorin dev
#21
rdmorin
closed
3 years ago
0
new and updated functions
#20
rdmorin
closed
3 years ago
0
some segmented data not found for unmatched tumours
#19
rdmorin
closed
2 years ago
2
finally fix all commonly conflicted dplyr function calls
#18
rdmorin
closed
3 years ago
0
bug fix
#17
rdmorin
closed
3 years ago
0
Bug fix and minor improvements
#16
rdmorin
closed
3 years ago
0
suppress obnoxious messages
#15
rdmorin
closed
3 years ago
1
extend ashm_matrix code to work without database
#14
rdmorin
closed
3 years ago
0
some bug fixes and new features plus a presentation
#13
rdmorin
closed
3 years ago
1
introduce function for Fisher's exact test of GISTIC2.0 outputs
#12
Kdreval
closed
3 years ago
1
introduce prettyChromoplot to handle GISTIC scores
#11
Kdreval
closed
3 years ago
0
fix bug in prettyOncoplot
#10
rdmorin
closed
3 years ago
0
Kdreval unmatched cn
#9
Kdreval
closed
3 years ago
0
updates to using bundled colours for GAMBL metadata
#8
rdmorin
closed
3 years ago
0
add p_val threshold to arguments
#7
rdmorin
closed
3 years ago
0
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