morinlab galaxy_tools issues

morinlab / galaxy_tools

A collection of Galaxy tools and workflows for performing cancer genome analyses.

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Add PyClone tool and Python package dependencies

#32 sjessa opened 8 years ago
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I2g and gistic

#31 ppararaj opened 8 years ago
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Make Docker Image for our toolbox

#30 marcoalbuquerque-sfu opened 8 years ago
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Draft Manuscript Finalized

#29 marcoalbuquerque-sfu opened 8 years ago
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Create Directory on NAS containing latest version of tools

#28 marcoalbuquerque-sfu closed 8 years ago
1
Created CoMEt tool. (Fixes #16)

#27 ppararaj opened 8 years ago
1
Migrated Elie's GISTIC2.0 galaxy tool

#26 ppararaj closed 8 years ago
1
Create IGV2Gistic galaxy tool (Fixes #11)

#25 ppararaj closed 8 years ago
1
Wrap lab_scripts for Galaxy

#24 sjessa opened 8 years ago
1
Add EXPANDS tool, EXPANDS dependency, and R-with-rJava dependency (fixes #6 and #9)

#23 sjessa opened 8 years ago
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Test comet tool

#22 ppararaj closed 8 years ago
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Comet tool

#21 ppararaj closed 8 years ago
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Add ensemble_vcf and bonus anaconda repos (fixes #8)

#20 BrunoGrandePhD closed 5 years ago
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Create morinkit v0.1.1 tool dependency package

#19 BrunoGrandePhD closed 8 years ago
1
Create Anaconda3 (Python 3.5) tool dependency package

#18 BrunoGrandePhD closed 8 years ago
2
Install libPNG in VM for Circos

#17 BrunoGrandePhD opened 8 years ago
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Create a Comet tool

#16 BrunoGrandePhD opened 8 years ago
2
Create MAF data type

#15 BrunoGrandePhD opened 8 years ago
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Integrate favourite MAFtools functions for visualization

#14 BrunoGrandePhD opened 8 years ago
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Push minimal working tools to Test Toolshed

#13 BrunoGrandePhD opened 8 years ago
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Update multiplot to use new colour scheme

#12 BrunoGrandePhD opened 8 years ago
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Sync Gistic tool with Prasath’s latest modifications to his wrapper

#11 BrunoGrandePhD closed 8 years ago
1
Add test PyClone tool using multiple samples

#10 BrunoGrandePhD opened 8 years ago
1
Install rJava on VM as a dependency for Expands

#9 BrunoGrandePhD closed 8 years ago
1
Create ensemble_caller Galaxy tool

#8 BrunoGrandePhD opened 8 years ago
3
Make Slide deck for Monday

#7 BrunoGrandePhD closed 8 years ago
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Apply Expands to exomes with known subclonal

#6 BrunoGrandePhD opened 8 years ago
2
Extend PyClone Galaxy tool to use Selin’s new plotting function

#5 BrunoGrandePhD opened 8 years ago
1
Finalize and deploy local Galaxy server for everyone to install their tools into

#4 BrunoGrandePhD closed 8 years ago
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Generate exome from CPCGene genomes with known clonal structure

#3 BrunoGrandePhD opened 8 years ago
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Recreate SNV and CNA Style Circos plot with TCGA data

#2 BrunoGrandePhD opened 8 years ago
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Create SV Style Circos plot using TCGA data

#1 BrunoGrandePhD opened 8 years ago
0