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morispi / LEVIATHAN

Linked-reads based structural variant caller with barcode indexing
GNU Affero General Public License v3.0
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LRez not working #11

Open jtweir opened 1 year ago

jtweir commented 1 year ago

The LRez included with LEVIATHAN seems not to be working with my data. I see others have had the same issue with LRex producing an "stoi" error

I installed LRex directly from the LRez github https://github.com/morispi/LRez and it work just fine. This suggests the LRex packaged with LEVIATHAN has a bug.

clemaitre commented 1 year ago

Hi,

thank you for this pertinent issue ! We have fixed several bugs in LRez but forgot to update the version in LEVIATHAN. If you installed LEVIATHAN through git, you need to update LEVIATHAN and its submodule and then re-compile both LRez and LEVIATHAN : 

git pull
git submodule update
./install.sh

If you installed LEVIATHAN with conda, just re-install the package (conda will pick the latest release of LRez, 2.2.4, which is bug-free).

Best, Claire

jtweir commented 1 year ago

Thanks Claire!