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moritzbuck / mOTUlizer

Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
GNU General Public License v3.0
12 stars 4 forks source link

Revamping anvi-run-motupan.py #1

Closed meren closed 3 years ago

meren commented 3 years ago

Most changes are limited to anvi-run-motupan.py. Please see the individual commits and commit logs to see their relevance. I've added a new heuristic to calculate missing completion values. Not using the existing ones is a waste if you have only one genome in twenty that has a missing completion :)

I also proposed two variable names for the mOTU class to avoid any confusion. They probably break other things :/ But the fix for those should be simple. Sorry! :)

Thank you!

moritzbuck commented 3 years ago

Looks all good, no I have to change 5 variables names in my code base, sed here we come! Thanks again!