Closed stain closed 2 months ago
I get same error with make
:
(base) stain@xenamint:~/src/examples/workflow-comparisons$ make
docker build -t arendsee/flucase-comparisons .
STEP 1/20: FROM arendsee/morloc:v0.48.0
STEP 2/20: ENV DEBIAN_FRONTEND=noninteractive
--> Using cache f99b09b8ec785e1a7c6b09d4020f07a14241f32f8cc4b7c16823a5149c5c23ac
--> f99b09b8ec7
STEP 3/20: ENV TZ=UTC
--> Using cache 4f06b254525c71073ab47f558f460d4d98d1f84b74118f75ddafde10fd3d150c
--> 4f06b254525
STEP 4/20: RUN apt-get update && apt-get install -y libeigen3-dev && apt-get clean && python3 -m pip install --upgrade pip setuptools wheel
--> Using cache ccea2b844c15423e17c1b45f6d8d664edddb9875f78e34bf3b91795c8fd390e0
--> ccea2b844c1
STEP 5/20: RUN ln -s /usr/include/eigen3/Eigen /usr/include/Eigen
--> Using cache d3809679532e379ac84f011ba30ca1218af33fc133cdb879957b0e291d7124ca
--> d3809679532
STEP 6/20: RUN pip3 install pybind11 numpy biopython requests rpy2 click
--> Using cache 48f0d814f00aa00410f9c93cc50c6a739f168e7699ee1e1a7fd0f262dbef4e40
--> 48f0d814f00
STEP 7/20: COPY modules /cases-lib
Error: error building at STEP "COPY modules /cases-lib": checking on sources under "/home/stain/src/examples/workflow-comparisons": copier: stat: "/modules": no such file or directory
make: *** [Makefile:5: build] Error 125
Using
docker build workflow-comparisons
on Linux Mint 21.3 with podman fails:It's not clear to me if this refers to
./workflow-comparisons/flu-case-study/modules
or another folder as it's a fairly generic folder name.