For which schema is a change/update being suggested? MorPhiC
What should the change/update be?
I would like to add a new schema for a dataset. The entity will be in hierarchy one level down from Study, i.e. Studies might have multiple datasets. Also, in DB, datasets might exist independently, to attach a Dataset to a Study is optional.
What new field(s) need to be changed/added?
Field name: dataset_name
Field description: A brief name for the dataset
Field type: text
Multiple values: no
Required: yes
Examples: Extra-embryonic lineage KO of gene STS
CV or enum: no
Field name: cell_line_name
Field description: Name of the cell line studied with this dataset
Field type: text
Multiple values: no
Required: yes
Examples: KOLF2.2J
CV or enum: no
Field name: assay_type
Field description: Name of the assay used in the generation of the dataset.
Field type: text
Multiple values: no
Required: yes
Examples: scRNAseq
(Note: should we consider the options for Pooled on this level, as well as Arrayed for the Genes altered... I don't know .. )
CV or enum: yes, CV
Field name: perturbation_type
Field description: Type of perturbation introduced by the gene expression alteration assay.
Field type: text
Multiple values: no
Required: yes
Examples: CRISPR-Cas9 KO
CV or enum: don't know? please advise :)
Field name: duo_code
Field description: Data Usage Ontology code that describe the data sharing restrictions for this dataset.
Field type: text
Multiple values: no
Required: yes
Examples: NRES, or DUO:0000046
Enum: don't know? please advise :)
Field name: release_date
Field description: Estimated date of data release to the public.
Field type: date
Multiple values: no
Required: yes
Examples: 2025-03-03
CV or enum: no
Field name: other_notes
Field description: Any notes for the dataset
Field type: text
Multiple values: no
Required: no
Examples: This dataset is not for processing just yet.
CV or enum: no
Why is the change requested?
At the moment all existing MorPhiC studies are equal to datasets, but we wish to establish the option to have datasets under Studies in case multiple assay types or DUO codes would be supported.
For which schema is a change/update being suggested? MorPhiC
What should the change/update be? I would like to add a new schema for a dataset. The entity will be in hierarchy one level down from Study, i.e. Studies might have multiple datasets. Also, in DB, datasets might exist independently, to attach a Dataset to a Study is optional.
What new field(s) need to be changed/added?
Field name: dataset_name
Field name: cell_line_name
Field name: assay_type
Field name: perturbation_type
Field name: duo_code
Field name: release_date
Field name: other_notes
Why is the change requested?
At the moment all existing MorPhiC studies are equal to datasets, but we wish to establish the option to have datasets under Studies in case multiple assay types or DUO codes would be supported.