After Stan runs, display a grid of divergence plots for all parameters – like the 2-D histogram grid, but with points color coded depending on whether the saved divergence value is "0" or "1." Code for an individual plot in such a grid can be found at morpho/morpho/plot/histo.py in morpho1.
I believe that Mathieu and I agreed this figure should be displayed automatically when Stan is run (and is just there to give a sense of the divergence situation, so it would not have to be fancy).
guiguem
commented
5 years ago
After Stan runs, display a grid of divergence plots for all parameters – like the 2-D histogram grid, but with points color coded depending on whether the saved divergence value is "0" or "1." Code for an individual plot in such a grid can be found at morpho/morpho/plot/histo.py in morpho1.
I believe that Mathieu and I agreed this figure should be displayed automatically when Stan is run (and is just there to give a sense of the divergence situation, so it would not have to be fancy).