WinError: FileNotFound at installation

Hi,

I am trying to install celloracle for Windows using python 3.8 (as currently described in the docs). However, i get this error:

  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [34 lines of output]
      # pysam: cython is available - using cythonize if necessary
      # pysam: htslib mode is shared
      # pysam: HTSLIB_CONFIGURE_OPTIONS=None
      '.' is not recognized as an internal or external command,
      operable program or batch file.
      '.' is not recognized as an internal or external command,
      operable program or batch file.
      # pysam: htslib configure options: None
      Traceback (most recent call last):
        File "C:\Users\curea\anaconda3\envs\celloracle\lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 353, in <module>
          main()
        File "C:\Users\curea\anaconda3\envs\celloracle\lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "C:\Users\curea\anaconda3\envs\celloracle\lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)
        File "C:\Users\curea\AppData\Local\Temp\pip-build-env-arjjdzkt\overlay\Lib\site-packages\setuptools\build_meta.py", line 325, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=['wheel'])
        File "C:\Users\curea\AppData\Local\Temp\pip-build-env-arjjdzkt\overlay\Lib\site-packages\setuptools\build_meta.py", line 295, in _get_build_requires
          self.run_setup()
        File "C:\Users\curea\AppData\Local\Temp\pip-build-env-arjjdzkt\overlay\Lib\site-packages\setuptools\build_meta.py", line 487, in run_setup
          super().run_setup(setup_script=setup_script)
        File "C:\Users\curea\AppData\Local\Temp\pip-build-env-arjjdzkt\overlay\Lib\site-packages\setuptools\build_meta.py", line 311, in run_setup
          exec(code, locals())
        File "<string>", line 442, in <module>
        File "<string>", line 82, in run_make_print_config
        File "C:\Users\curea\anaconda3\envs\celloracle\lib\subprocess.py", line 415, in check_output
          return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
        File "C:\Users\curea\anaconda3\envs\celloracle\lib\subprocess.py", line 493, in run
          with Popen(*popenargs, **kwargs) as process:
        File "C:\Users\curea\anaconda3\envs\celloracle\lib\subprocess.py", line 858, in __init__
          self._execute_child(args, executable, preexec_fn, close_fds,
        File "C:\Users\curea\anaconda3\envs\celloracle\lib\subprocess.py", line 1327, in _execute_child
          hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
      FileNotFoundError: [WinError 2] The system cannot find the file specified
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

Any idea what might cause this? I am running the installation o a new conda environment (only other additional package was jupyter).

Thanks!

morris-lab / CellOracle

WinError: FileNotFound at installation #190