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morris-lab / CellOracle

This is the alpha version of the CellOracle package
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Can't convert from Seurat to anndata #8928 #201

Closed xiaomaolxc closed 4 months ago

xiaomaolxc commented 6 months ago

I'm sorry to bother you, but I found a problem while using this tool. I tried to look for similar issues from previous ones, but I didn't find anyone else having this question: I plan to convert Seurat's Rds file into an andata file through the following method data1=co. data_conversion. seurat_object_to annondata ('/share/pub/liuxch/HM Sex/HM Sex/Sc/CHRNB1/output/donor_clean.) Rds', delete_tmp_file=True) But I found that after the conversion, the anadata data was empty, and I didn't find any problems loading seurat object ... making AnnData ... {}