I am trying to build a base GRN using my bulk ATAC-seq data. In the pipeline description, it is mentioned that it is possible to get distal cis-regulatory elements annotation, however, the pipeline stops at annotating TSS and proceeds directly to the transcription factor motif scan (Option2 bulk ATAC-seq).
I am wondering if you have a ready solution just like for scATAC-seq data with Cicero.
Hi,
I am trying to build a base GRN using my bulk ATAC-seq data. In the pipeline description, it is mentioned that it is possible to get distal cis-regulatory elements annotation, however, the pipeline stops at annotating TSS and proceeds directly to the transcription factor motif scan (Option2 bulk ATAC-seq). I am wondering if you have a ready solution just like for scATAC-seq data with Cicero.
Thanks!
Best, Giegie