morris-lab CellTagR issues

morris-lab / CellTagR

This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.

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issues

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Starcode issue with CellTag object of 12 samples and binarization error

#25 FengHuu opened 8 months ago
0
error in Network construction

#24 clumeng closed 1 year ago
2
SRA data problem

#23 AmoriLi opened 1 year ago
1
Question about percentile cutoffs in CellTagWhitelistFiltering function

#22 RoganGrant opened 1 year ago
0
Barcode extraction and clone counting

#21 crist156 opened 1 year ago
7
Best way to subset CellTag object

#20 elisafazz closed 2 years ago
2
Error in JaccardAnalysis

#19 elisafazz closed 1 year ago
1
Paired-end reads & multiple fastq files

#18 deeKal closed 2 years ago
7
similarities of the cell tag barcodes within clones

#17 zhoulitom closed 2 years ago
2
whitelist error

#16 khandaud15 closed 2 years ago
1
Error in JaccardAnalysis: negative length vectors are not allowed

#15 Hjackl35 closed 3 years ago
14
Error in CellTagMatrixCount when generating the count matrix for v2

#14 Hjackl35 closed 3 years ago
19
Add compatibility for BAM files produced from zUMIs

#13 dzhang12 closed 3 years ago
1
Error in running ./starcode code line

#12 bhrtrcn closed 4 years ago
1
bam.test.obj <- CellTagMatrixCount(celltag.obj = bam.test.obj, barcodes.file = "./barcodes_all.tsv")

#11 lk754673712 closed 4 years ago
5
how long will it take to generate the sparse count matrix usually

#10 whosnothungry closed 4 years ago
2
statistical analysis to detect fate bias in clones

#9 lb15 closed 4 years ago
1
Running multiple BAM does not seem to capture all cellTags present in the data

#8 bc2zb closed 4 years ago
2
Subscript out of bounds when convertCellTagMatrix2LinkList data

#7 lk754673712 closed 4 years ago
3
CellTagPostCollapsing returns collapsed.count with 1 row when reading in multiple BAM files

#6 bc2zb closed 4 years ago
2
Overlaying cell source (i.e. which bam) over graph networks

#5 RobertKSuter closed 5 years ago
7
Merging two CellTag objects?

#4 RobertKSuter closed 5 years ago
13
SingleCellDataBinatization error?

#3 lb15 closed 5 years ago
2
CellTagR support for Drop-seq BAM files

#2 sarshanp closed 5 years ago
5
allow .fq file extension

#1 OwenRackham closed 5 years ago
1