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morrislab / pairtree

Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.
MIT License
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numba need Numpy 1.21 or less #25

Closed healthcare-mikeli closed 2 years ago

healthcare-mikeli commented 2 years ago

https://github.com/morrislab/pairtree/blob/2fd9f958270b74873c5237311e413c4eea6a403f/requirements.txt#L1

specify compatible numpy version in requirements.txt numpy==1.21.4

if you need to downgrade existing numpy: use this command pip install --upgrade numpy==1.21.4

This helps me resolve the issue.