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morrislab / pairtree

Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.
MIT License
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cannot open shared object file: No such file or directory #32

Closed jubayer98 closed 2 years ago

jubayer98 commented 2 years ago

Traceback (most recent call last): File "(...)/pairtree/pairtree/bin/pairtree", line 177, in main() File "(...)/pairtree/pairtree/bin/pairtree", line 141, in main parallel, File "(...)/pairtree/pairtree/bin/../lib/tree_sampler.py", line 643, in sample_trees raise exception OSError: (...)/pairtree/pairtree/bin/../lib/projectppm/bin/libprojectppm.so: cannot open shared object file: No such file or directory Sampling trees: 0%| | 0/6000 [00:11<?, ?tree/s]

Do not find any clue regarding this error.

ethanumn commented 2 years ago

Hi there --

It looks like the projectppm project wasn't cloned and installed properly. Please refer to our STAR protocols paper, specifically the Troubleshooting and Clone our repository and install requirements sections. They provide directions and problem solving techniques related to cloning and building the projectppm software.

You can also refer to Section (2) of this section of our README.

Please let me know if this solves your problem.

jubayer98 commented 2 years ago

Hi there --

It looks like the projectppm project wasn't cloned and installed properly. Please refer to our STAR protocols paper, specifically the Troubleshooting and Clone our repository and install requirements sections. They provide directions and problem solving techniques related to cloning and building the projectppm software.

You can also refer to Section (2) of this section of our README.

Please let me know if this solves your problem.

  • Ethan

Hi Ethan,

Thanks for your prompt response. The problem actually being solved. Thanks for your suggestion and relevant sources.