Error while running pairtree

morrislab / pairtree

Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

MIT License

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Error while running pairtree #49

Closed itigupta2429 closed 7 months ago

itigupta2429 commented 7 months ago

Hi Team, I am facing an error while running pairtree. The error is "ValueError: No function 'betainc' found in __pyx_capi__ of 'scipy.special.cython_special'" I tried to reinstall pairtree with specifying numpy version as mentioned in this post: [(https://github.com/morrislab/pairtree/issues/40)] But still the error persists. What could be the possible solution to this? Thanks in advance!

ethanumn commented 7 months ago

Hi there --

This is an issue with the latest version of scipy. I've included in the new requirements.txt file a specific version that's compatible with Pairtree. Please let me know if this fixes the issue on your end.

Ethan

itigupta2429 commented 7 months ago

Hey, reinstalling pairtree with the updated requirements.txt worked for me. Thanks for your quick response and support!