search

morrislab / phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.
GNU General Public License v3.0
108 stars 55 forks source link

Dealing with the input of multiple samples #126

Open b-niu opened 4 years ago

b-niu commented 4 years ago

Dear author, I'd like to ask about:

  1. For example, if a mutation EGFR.p.L858R is in the VCFs of sample NO. 1 and 2 of a patient, but not sample NO.3. Should we leave it blank in the ssm_data.txt of sample 3?

  2. phylowgs can handle indels, is it right?.

Thanks a lot.