quaidmorris
commented
6 years ago Maybe there is an error in your input files? This seems like a relatively easy clustering problem. You should at least try rerunning PhyloWGS with a different random seed.
On Thu, Sep 27, 2018 at 10:16 AM felixfrenkel notifications@github.com wrote:
Dear Quaid,
We are running PhyloWGS on deeply analyzed primary aml31 sample from http://griffithlab.org/aml31/index.html
But due to some reasons we get ~100% single clone while there are 4 clones (see Fig. S21D)
[image: image] https://user-images.githubusercontent.com/19567969/46142592-23519c00-c260-11e8-892d-33916bf60fa7.png
Input files are attached https://github.com/morrislab/phylowgs/files/2423868/aml31.zip
Any help will be appreciated!
Felix
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-- Quaid Morris, PhD Professor, The Donnelly Centre Departments of Molecular Genetics and Computer Science 160 College St, Rm 616 Toronto ON, M5S 3E1 Canada http://morrislab.ca http://morrislab.med.utoronto.ca cell: (416) 220 5796
Dear Quaid,
We are running PhyloWGS on deeply analyzed primary aml31 sample from http://griffithlab.org/aml31/index.html
But due to some reasons we get ~100% single clone while there are 4 clones (see Fig. S21D)
Input files are attached
Any help will be appreciated!
Felix