Visualization error

[gerapskx]

Hi,

I have some problems with the figures. Every time i try to generate a plot, the numbers (e.g., p-values) are not complete. This occurs not only with this module-trait heatmap, also whith the heatmap of two-objects comparison. Do you have any idea of why this is occurring?

This is an example;

[nargesr]

Hi @gerapskx

Which version of pyWGCNA are you using? Does this also happen with a provided example? Also if you saved the plot, would you be able to see the complete plot?

[gerapskx]

Hi @gerapskx

Which version of pyWGCNA are you using? Does this also happen with a provided example? Also if you saved the plot, would you be able to see the complete plot?

I am using 2.0.4, Actually it started to happen recently, (possible three-two weeks ago) If i save the plot, still shows like my example

[nargesr]

hmm... Do you mean it worked before and suddenly without any changes such as updating packages, you encountered this?

[gerapskx]

hmm... Do you mean it worked before and suddenly without any changes such as updating packages, you encountered this?

Yes. I uninstalled and reinstalled, still same

[nargesr]

I'm not sure if that's something related to PyWGCNA and unfortunately, I'm unable to reproduce your error.

one thing to check is to plot it separately with values stored at AS_OE.moduleTraitCor and AS_OE.moduleTraitPvalue using sns.heatmap().

It might be something related to your Seaborn package or its dependencies. I found this issue maybe you had the same thing??

[gerapskx]

I'm not sure if that's something related to PyWGCNA and unfortunately, I'm unable to reproduce your error.

one thing to check is to plot it separately with values stored at AS_OE.moduleTraitCor and AS_OE.moduleTraitPvalue using sns.heatmap().

It might be something related to your Seaborn package or its dependencies. I found this issue maybe you had the same thing??

I just did the same but for the seaborn package, now it is working. Thank you so much!