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mortazavilab / PyWGCNA

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad415/7218311
MIT License
209 stars 48 forks source link

missing data 3xTgAD_paper #60

Closed jumoline closed 1 year ago

jumoline commented 1 year ago

Hi, I'm going thought the tutorial Notebooks, and 3xTgAD_paper shows as one of the datasets to compare against the 5xFAD_paper. Could we please have a link to the data? Regards J

nargesr commented 1 year ago

Hi,

There are two papers where you can find information and bulk RNA-seq datasets using 3xTgAD mice:

  1. https://www.frontiersin.org/articles/10.3389/fnins.2021.785276/full
  2. https://www.biorxiv.org/content/10.1101/2021.09.29.462436v1.full

If you need an actual pickle file, please let me know and I can upload it to Zenodo

jumoline commented 1 year ago

Thank you, that would be very useful :)

nargesr commented 1 year ago

Sure! I just upload the pickle file here

Please let me know if there is any problem

jumoline commented 1 year ago

Awesome, thank you very much