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mortazavilab / PyWGCNA

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad415/7218311
MIT License
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Module Colors #9

Closed nmank closed 1 year ago

nmank commented 1 year ago

Hi,

Thanks for your fix for the last bug!

I think I found another one in version 1.0.0

When I run findModules, I get the error that "Gray" isn't in colorSeq.

I think you can fix this by just removing line 1822 in wgcna.py that says: colorSeq.remove("Gray")

Thanks, Nate

nargesr commented 1 year ago

Hi, it should be fixed by now. I removed that specific color to avoid confusion between the "grey" module in the original WGCNA and "gray".