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mortazavilab / swan_vis

A Python library to visualize and analyze long-read transcriptomes
https://freese.gitbook.io/swan/
MIT License
57 stars 11 forks source link

self.create_dfs_db(fname, annot, whitelist, 'hepg2_1') #4

Closed ashokpatowary closed 4 years ago

ashokpatowary commented 4 years ago

Hi @fairliereese

Its a really nice package. I was looking for such visualization and switcinging tool for some. However, I am having some issues. I am having an error and I am trying to use talon database. Its mainly an error for not finding hepg2_1 in database. I think its because of the following line. Can you look into it?

self.create_dfs_db(fname, annot, whitelist, 'hepg2_1')

fairliereese commented 4 years ago

Hi there, I'm glad you are interested in using Swan! I'm so sorry, this line totally looks like I edited it in internal testing and somehow I forgot to remove it. I'll push a new release with the corrected code as soon as possible.

fairliereese commented 4 years ago

The new version is up! You can reinstall it from pip. It should work for you now.