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moss-lab / ScanFold

ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by first scanning a single input sequence to identify regions which generate negative thermodynamic z-scores (a hallmark of functional RNA sequences), and subsequently identifying the specific base pairs which were responsible for generating the low z-scores.
https://peerj.com/articles/6136/
MIT License
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"import RNA" #3

Closed Abhinav-Mittal closed 4 years ago

Abhinav-Mittal commented 4 years ago

Hi, What is "import RNA" package in line 25 of ScanFold-Scan? Thanks, Abhinav Mittal University of Rochester Medical Center, Biophysics and Biochemistry Department

rjandr commented 4 years ago

Hello Abhinav,

That will import ViennaRNA python bindings and allow the script to work. Check this link to see how you install that module on your system.

https://www.tbi.univie.ac.at/RNA/documentation.html#install

And here is a thread discussing some potential troubleshooting/fixes: https://www.biostars.org/p/102061/

Let me know if that helps?