Hello,
This issue is related to #2. It seems like the number of clusters allowed has been increased to 20 as as result of #2. However, now I get the following error with more than 20 clusters.
IndexError Traceback (most recent call last)
[<ipython-input-47-f6b45923880d>](https://localhost:8080/#) in <module>()
6 slingshot = Slingshot(adata.X.astype("float32"), pd.get_dummies(adata.obs["louvain"]).to_numpy(dtype="float64"), start_node=12, debug_level='verbose')
7
----> 8 slingshot.fit(num_epochs=1, debug_axes=axes)
2 frames
[/usr/local/lib/python3.7/dist-packages/slingshot/slingshot.py](https://localhost:8080/#) in fit(self, num_epochs, debug_axes)
72 self._set_debug_axes(debug_axes)
73 if self.curves is None: # Initial curves and pseudotimes:
---> 74 self.get_lineages()
75 self.construct_initial_curves()
76 self.cell_weights = [self.cluster_labels_onehot[:, self.lineages[l].clusters].sum(axis=1)
[/usr/local/lib/python3.7/dist-packages/slingshot/slingshot.py](https://localhost:8080/#) in get_lineages(self)
153 # from matplotlib import pyplot as plt
154 # plt.imshow(dists)
--> 155 self.plotter.clusters(self.debug_axes[0, 0])
156 for root, children in tree.items():
157 for child in children:
[/usr/local/lib/python3.7/dist-packages/slingshot/plotter.py](https://localhost:8080/#) in clusters(self, ax, labels, s, alpha, color_mode)
23
24 if color_mode == 'clusters':
---> 25 colors = np.array(sns.color_palette())[sling.cluster_labels]
26 handles = [
27 Patch(color=colors[k], label=labels[k]) for k in range(sling.num_clusters)
IndexError: index 22 is out of bounds for axis 0 with size 20
Edit: Sorry, the problem was solved in #2. The package on pypi isn't updated.
Hello, This issue is related to #2. It seems like the number of clusters allowed has been increased to 20 as as result of #2. However, now I get the following error with more than 20 clusters.
Edit: Sorry, the problem was solved in #2. The package on pypi isn't updated.