mossmatters / HybPiper

Recovering genes from targeted sequence capture data
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drop in recovered genes going from 2.1.8 to 2.2.0 #157

Closed HaydenRJones closed 2 months ago

HaydenRJones commented 2 months ago

as title says I'm noticing a fairly large drop in the number of genes recovered in the most recent version of hybpiper - especially for 150% coverage which has gone from quite high to basically zero.

From the stats output: top four rows were assembled using 2.1.8, bottom four are 2.2.0 image

Not quite sure what to make of it, but am happy to provide any more details that could help with diagnosing this.