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mothur / mothur.github.io

wiki for the mothur software package
https://mothur.github.io
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make.shared #100

Closed LeeJH5120 closed 1 year ago

LeeJH5120 commented 1 year ago

shared file and count_table file have the same classification ID, but different counts.

if read count_table | grep M06221_430_000000000-KWB4V_1_2109_14089_10175 M06221_430_000000000-KWB4V_1_2109_14089_10175 691 (M~:ID; 691:count)

read list file | grep M06221_430_000000000-KWB4V_1_2109_14089_10175 Otu00001 M06221_430_000000000-KWB4V_1_2109_14089_10175

read shared file | grep M06221_430_000000000-KWB4V_1_2109_14089_10175 Otu00001 0

This is a critical problem for downstream analysis.

LeeJH5120 commented 1 year ago

Solved.

After creating a shard + list with count_table, using the created list If you do make.shared(list, count_table) again, it works normally.

I wonder if there is any reason to process it one more time.

pschloss commented 1 year ago

Glad you got it solved. In the future, these types of questions should be posted at forum.mothur.org