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wiki for the mothur software package
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Question on: Greengenes-formatted databases #103

Closed bioinfogini closed 6 months ago

bioinfogini commented 1 year ago

Hello! Greengenes2 is out there! I was wondering if you are preparing a formatted-database to be used on Mothur! Thanks in advance.

Here the references: paper: https://www.biorxiv.org/content/10.1101/2022.12.19.520774v1 server: http://ftp.microbio.me/greengenes_release/

pschloss commented 1 year ago

Do you have a link to the paper describing these releases? The path you provided is an absolute path to your computer.

Thanks, Pat

On Tue, May 2, 2023 at 7:59 AM Chiara Gini @.***> wrote:

Hello! Greengenes2 is out there! I was wondering if you are preparing a formatted-database to be used on Mothur! Thanks in advance.

Here the references: paper: /home/users/chiara.gini/MILKQUA/Databases/RDPClassifier_16S_trainsetNo18_QiimeFormat server: http://ftp.microbio.me/greengenes_release/

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bioinfogini commented 1 year ago

Hi Pat! Ouch, thanks for noticing! I have now updated it 🙂