The `filter_taxonomy()` function uses a fractional value for `min_confidence` while output is a percentage

mothur / phylotypr

Tools for Classifying DNA Sequences

http://riffomonas.org/phylotypr/

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The `filter_taxonomy()` function uses a fractional value for `min_confidence` while output is a percentage #1

Closed pschloss closed 1 month ago

pschloss commented 3 months ago

Looking at the vignette, we see that the confidence scores are outputted as percents (e.g. 83) rather than fractions (e.g., 0.83). Let's go with percents and convert the min_confidence default value to 80.

pschloss commented 3 months ago

It appears that classify_sequence is outputting fractions, but print_taxonomy is outputting percentages