Error: Cannot call bwa on the file ERR4563329.fastq.gz

motu-tool / mOTUs

motus - a tool for marker gene-based OTU (mOTU) profiling

GNU General Public License v3.0

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Error: Cannot call bwa on the file ERR4563329.fastq.gz #125

Open xiangjianmao opened 5 months ago

xiangjianmao commented 5 months ago

Error: bwa failed Error: Cannot call bwa on the file ERR4563329.fastq.gz 屏幕截图 2024-03-13 212311

Anto007 commented 4 months ago

I believe indexing your database fasta via bwa will make this error disappear

hjruscheweyh commented 4 months ago

Dear @xiangjianmao

The database is downloaded as an indexed bwa database already. My guess is that the read file is corrupted or that bwa is not installed properly. Can you check with

gzip -t ERR...gz
bwa mem

and share the result.